IL_8C3A_063

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACGAAG*UCGAA

Length

13 nucleotides

Bulged bases

8C3A|1|1|C|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

8C3A|1|1|U|1384
8C3A|1|1|G|1385
8C3A|1|1|A|1386
8C3A|1|1|C|1387
8C3A|1|1|G|1388
8C3A|1|1|A|1389
8C3A|1|1|A|1390
8C3A|1|1|G|1391
*
8C3A|1|1|U|1411
8C3A|1|1|C|1412
8C3A|1|1|G|1413
8C3A|1|1|A|1414
8C3A|1|1|A|1415

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal protein L24

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-B

Chain x

Ribosomal protein L22