IL_6LSS_103

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6LSS|1|2|A|3663, 6LSS|1|2|U|3679, 6LSS|1|2|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_103 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0843

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6LSS|1|2|C|3660
6LSS|1|2|G|3661
6LSS|1|2|A|3662
6LSS|1|2|A|3663
6LSS|1|2|G|3664
6LSS|1|2|G|3665
*
6LSS|1|2|U|3677
6LSS|1|2|G|3678
6LSS|1|2|U|3679
6LSS|1|2|U|3680
6LSS|1|2|G|3681
6LSS|1|2|A|3682
6LSS|1|2|C|3683
6LSS|1|2|G|3684

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8