IL_6LSS_106

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6LSS|1|2|A|3746, 6LSS|1|2|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_106 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0894

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6LSS|1|2|U|3704
6LSS|1|2|G|3705
*
6LSS|1|2|U|3745
6LSS|1|2|A|3746
6LSS|1|2|A|3747
6LSS|1|2|A|3748

Current chains

Chain 2

28S rRNA

Nearby chains

Chain m

60S ribosomal protein L8