IL_6LSS_163

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6LSS|1|2|C|501, 6LSS|1|2|C|502, 6LSS|1|2|C|503, 6LSS|1|2|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_163 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.3258

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6LSS|1|2|G|500
6LSS|1|2|C|501
6LSS|1|2|C|502
6LSS|1|2|C|503
6LSS|1|2|G|504
6LSS|1|2|G|505
*
6LSS|1|2|U|653
6LSS|1|2|C|654

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18