IL_6LSS_174

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_174 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.2223

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6LSS|1|2|PSU|3715
6LSS|1|2|C|3716
6LSS|1|2|A|3717
6LSS|1|2|A2M|3718
6LSS|1|2|A|3719
6LSS|1|2|G|3720
6LSS|1|2|U|3721
*
6LSS|1|2|A|3732
6LSS|1|2|A|3733
6LSS|1|2|U|3734
6LSS|1|2|G|3735
6LSS|1|2|A|3736
6LSS|1|2|A|3737
6LSS|1|2|G|3738

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain W

60S ribosomal protein L36a