IL_6LU8_018

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

6LU8|1|2|C|1301, 6LU8|1|2|U|1302, 6LU8|1|2|A|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_018 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3477

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6LU8|1|2|G|443
6LU8|1|2|G|444
6LU8|1|2|U|445
6LU8|1|2|C|446
*
6LU8|1|2|G|1300
6LU8|1|2|C|1301
6LU8|1|2|U|1302
6LU8|1|2|A|1303
6LU8|1|2|C|1304

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a