IL_6LU8_049

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_049 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2926

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LU8|1|2|G|1425
6LU8|1|2|G|1426
6LU8|1|2|A|1427
6LU8|1|2|U|1428
6LU8|1|2|C|1429
*
6LU8|1|2|G|1455
6LU8|1|2|B8Q|1456
6LU8|1|2|G|1457
6LU8|1|2|C|1458
6LU8|1|2|A|1459
6LU8|1|2|C|1460

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain Z

60S ribosomal protein L18