IL_6LU8_104

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6LU8|1|2|A|3663, 6LU8|1|2|U|3679, 6LU8|1|2|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_104 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0821

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6LU8|1|2|C|3660
6LU8|1|2|G|3661
6LU8|1|2|A|3662
6LU8|1|2|A|3663
6LU8|1|2|G|3664
6LU8|1|2|G|3665
*
6LU8|1|2|U|3677
6LU8|1|2|G|3678
6LU8|1|2|U|3679
6LU8|1|2|U|3680
6LU8|1|2|G|3681
6LU8|1|2|A|3682
6LU8|1|2|C|3683
6LU8|1|2|G|3684

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8