IL_6LU8_125

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_125 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.4938

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6LU8|1|2|C|4412
6LU8|1|2|C|4413
6LU8|1|2|A|4414
6LU8|1|2|1MA|4415
6LU8|1|2|G|4416
*
6LU8|1|2|C|4426
6LU8|1|2|G|4427
6LU8|1|2|A|4428
6LU8|1|2|C|4429
6LU8|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains