IL_6LU8_164

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_164 not in the Motif Atlas

Homologous match to IL_8C3A_018

Geometric discrepancy: 0.5399

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6LU8|1|2|G|461
6LU8|1|2|G|462
6LU8|1|2|A|463
6LU8|1|2|G|464
*
6LU8|1|2|C|691
6LU8|1|2|A|692
6LU8|1|2|C|693
6LU8|1|2|C|694

Current chains

Chain 2

28S rRNA

Nearby chains

Chain l

60S ribosomal protein L28

Chain o

60S ribosomal protein L6