IL_6LU8_185

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6LU8|1|2|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LU8_185 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1442

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6LU8|1|2|A|4681
6LU8|1|2|U|4682
6LU8|1|2|U|4683
6LU8|1|2|A|4684
6LU8|1|2|U|4685
*
6LU8|1|2|A|4705
6LU8|1|2|G|4706
6LU8|1|2|A|4707
6LU8|1|2|A|4708
6LU8|1|2|U|4709

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain V

60S ribosomal protein L13a

Chain z

Protein LLP homolog