IL_6M62_009

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGG*CUUUGUAA

Length

12 nucleotides

Bulged bases

6M62|1|1|U|248, 6M62|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6M62|1|1|U|168
6M62|1|1|U|169
6M62|1|1|G|170
6M62|1|1|G|171
*
6M62|1|1|C|247
6M62|1|1|U|248
6M62|1|1|U|249
6M62|1|1|U|250
6M62|1|1|G|251
6M62|1|1|U|252
6M62|1|1|A|253
6M62|1|1|A|254

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A