IL_6M62_043
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACACCACAAAAG*CUGAAAAUGGAUGGCGC
- Length
- 30 nucleotides
- Bulged bases
- 6M62|1|1|C|1198, 6M62|1|1|C|1199, 6M62|1|1|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6M62|1|1|G|1194
6M62|1|1|A|1195
6M62|1|1|C|1196
6M62|1|1|A|1197
6M62|1|1|C|1198
6M62|1|1|C|1199
6M62|1|1|A|1200
6M62|1|1|C|1201
6M62|1|1|A|1202
6M62|1|1|A|1203
6M62|1|1|A|1204
6M62|1|1|A|1205
6M62|1|1|G|1206
*
6M62|1|1|C|1298
6M62|1|1|U|1299
6M62|1|1|G|1300
6M62|1|1|A|1301
6M62|1|1|A|1302
6M62|1|1|A|1303
6M62|1|1|A|1304
6M62|1|1|U|1305
6M62|1|1|G|1306
6M62|1|1|G|1307
6M62|1|1|A|1308
6M62|1|1|U|1309
6M62|1|1|G|1310
6M62|1|1|G|1311
6M62|1|1|C|1312
6M62|1|1|G|1313
6M62|1|1|C|1314
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain W
- Ribosome assembly factor MRT4
- Chain b
- Nucleolar GTP-binding protein 1
- Chain f
- 60S ribosomal protein L33-A
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
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