IL_6M62_046
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 6M62|1|1|G|1236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_046 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.5507
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6M62|1|1|G|1234
6M62|1|1|U|1235
6M62|1|1|G|1236
6M62|1|1|G|1237
6M62|1|1|C|1238
*
6M62|1|1|G|1250
6M62|1|1|A|1251
6M62|1|1|A|1252
6M62|1|1|U|1253
6M62|1|1|C|1254
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain W
- Ribosome assembly factor MRT4
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain x
- Ribosome assembly protein 4
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