3D structure

PDB id
6M62 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
6M62|1|1|A|1263
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6M62_047 not in the Motif Atlas
Geometric match to IL_5D8H_003
Geometric discrepancy: 0.1319
The information below is about IL_5D8H_003
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

6M62|1|1|G|1262
6M62|1|1|A|1263
6M62|1|1|G|1264
6M62|1|1|U|1265
6M62|1|1|G|1266
*
6M62|1|1|C|1275
6M62|1|1|U|1276
6M62|1|1|C|1277

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain W
Ribosome assembly factor MRT4
Chain r
Ribosome biogenesis protein NSA2

Coloring options:


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