IL_6M62_047

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6M62|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_047 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1319

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6M62|1|1|G|1262
6M62|1|1|A|1263
6M62|1|1|G|1264
6M62|1|1|U|1265
6M62|1|1|G|1266
*
6M62|1|1|C|1275
6M62|1|1|U|1276
6M62|1|1|C|1277

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2