3D structure

PDB id
6M62 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
6M62|1|1|G|2335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6M62_068 not in the Motif Atlas
Geometric match to IL_5J7L_307
Geometric discrepancy: 0.1413
The information below is about IL_5J7L_307
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6M62|1|1|A|1901
6M62|1|1|G|1902
6M62|1|1|U|1903
6M62|1|1|C|1904
6M62|1|1|G|1905
6M62|1|1|G|1906
*
6M62|1|1|C|2333
6M62|1|1|U|2334
6M62|1|1|G|2335
6M62|1|1|U|2336

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain I
Bud site selection protein 20
Chain V
60S ribosomal protein L23-A
Chain m
Nucleolar GTP-binding protein 2

Coloring options:


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