IL_6M62_076

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6M62|1|1|A|2397, 6M62|1|1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_076 not in the Motif Atlas

Geometric match to IL_5J7L_320

Geometric discrepancy: 0.3172

The information below is about IL_5J7L_320

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6M62|1|1|G|2396
6M62|1|1|A|2397
6M62|1|1|A|2398
*
6M62|1|1|U|2981
6M62|1|1|A|2982
6M62|1|1|C|2983
6M62|1|1|C|2984

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A