IL_6M62_085

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAGUCC*GCUAG

Length

12 nucleotides

Bulged bases

6M62|1|1|U|2771, 6M62|1|1|C|2772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6M62|1|1|U|2767
6M62|1|1|U|2768
6M62|1|1|A|2769
6M62|1|1|G|2770
6M62|1|1|U|2771
6M62|1|1|C|2772
6M62|1|1|C|2773
*
6M62|1|1|G|2787
6M62|1|1|C|2788
6M62|1|1|U|2789
6M62|1|1|A|2790
6M62|1|1|G|2791

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28