IL_6M62_097

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

6M62|1|1|U|3078, 6M62|1|1|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_097 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.0884

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6M62|1|1|C|3063
6M62|1|1|U|3064
*
6M62|1|1|A|3077
6M62|1|1|U|3078
6M62|1|1|U|3079
6M62|1|1|G|3080

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A