IL_6M62_111

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6M62|1|1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_111 not in the Motif Atlas

Geometric match to IL_1ET4_002

Geometric discrepancy: 0.3236

The information below is about IL_1ET4_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6M62|1|1|G|3340
6M62|1|1|U|3341
6M62|1|1|A|3342
*
6M62|1|1|U|3363
6M62|1|1|C|3364

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain u

Ribosome biogenesis protein RLP24