IL_6M62_120
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGA*UUGAA
- Length
- 8 nucleotides
- Bulged bases
- 6M62|1|6|G|52, 6M62|1|6|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_120 not in the Motif Atlas
- Geometric match to IL_7RQB_097
- Geometric discrepancy: 0.3466
- The information below is about IL_7RQB_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_90933.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
6M62|1|6|U|26
6M62|1|6|G|27
6M62|1|6|A|28
*
6M62|1|6|U|50
6M62|1|6|U|51
6M62|1|6|G|52
6M62|1|6|A|53
6M62|1|6|A|54
Current chains
- Chain 6
- ITS2-1 miscRNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain K
- Proteasome-interacting protein CIC1
- Chain o
- Ribosome biogenesis protein 15
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