IL_6M62_124
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAAC*GGA
- Length
- 8 nucleotides
- Bulged bases
- 6M62|1|1|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6M62_124 not in the Motif Atlas
- Homologous match to IL_8P9A_290
- Geometric discrepancy: 0.1185
- The information below is about IL_8P9A_290
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
6M62|1|1|U|1501
6M62|1|1|C|1502
6M62|1|1|A|1503
6M62|1|1|A|1504
6M62|1|1|C|1505
*
6M62|1|1|G|1513
6M62|1|1|G|1514
6M62|1|1|A|1515
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain P
- 60S ribosomal protein L17-A
- Chain R
- 60S ribosomal protein L19-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain l
- 60S ribosomal protein L39
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