IL_6M62_135

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6M62|1|6|G|52, 6M62|1|6|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6M62_135 not in the Motif Atlas

Geometric match to IL_8P9A_381

Geometric discrepancy: 0.2825

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6M62|1|6|U|26
6M62|1|6|G|27
*
6M62|1|6|U|51
6M62|1|6|G|52
6M62|1|6|A|53
6M62|1|6|A|54

Current chains

Chain 6

ITS2-1 miscRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15