IL_6MDZ_001
3D structure
- PDB id
- 6MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GACAA*UUUCC
- Length
- 10 nucleotides
- Bulged bases
- 6MDZ|1|C|A|10, 6MDZ|1|C|C|11
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58112.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6MDZ|1|C|G|9
6MDZ|1|C|A|10
6MDZ|1|C|C|11
6MDZ|1|C|A|12
6MDZ|1|C|A|13
*
6MDZ|1|E|U|9
6MDZ|1|E|U|10
6MDZ|1|E|U|11
6MDZ|1|E|C|12
6MDZ|1|E|C|13
Current chains
- Chain C
- RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')
- Chain E
- RNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*CP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3')
Nearby chains
- Chain A
- Protein argonaute-2
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