IL_6MKN_029
3D structure
- PDB id
- 6MKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6MKN|1|A|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MKN_029 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.0741
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6MKN|1|A|G|683
6MKN|1|A|A|684
6MKN|1|A|G|685
6MKN|1|A|U|686
6MKN|1|A|A|687
6MKN|1|A|G|688
*
6MKN|1|A|C|699
6MKN|1|A|G|700
6MKN|1|A|C|701
6MKN|1|A|A|702
6MKN|1|A|G|703
6MKN|1|A|A|704
6MKN|1|A|U|705
6MKN|1|A|A|706
6MKN|1|A|C|707
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
Coloring options: