IL_6MPF_022
3D structure
- PDB id
- 6MPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 6MPF|1|A|A|555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MPF_022 not in the Motif Atlas
- Homologous match to IL_4LFB_022
- Geometric discrepancy: 0.0637
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
6MPF|1|A|C|552
6MPF|1|A|G|553
6MPF|1|A|U|554
6MPF|1|A|A|555
6MPF|1|A|A|556
6MPF|1|A|A|557
6MPF|1|A|G|558
*
6MPF|1|A|C|857
6MPF|1|A|G|858
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
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