IL_6MPF_053

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6MPF|1|A|C|1382, 6MPF|1|A|A|1480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MPF_053 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2016

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6MPF|1|A|C|1381
6MPF|1|A|C|1382
6MPF|1|A|G|1383
*
6MPF|1|A|C|1478
6MPF|1|A|A|1479
6MPF|1|A|A|1480
6MPF|1|A|G|1481

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

mRNA A-site fragment