IL_6MPI_046
3D structure
- PDB id
- 6MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MPI_046 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.0656
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6MPI|1|A|U|1247
6MPI|1|A|A|1248
6MPI|1|A|C|1249
6MPI|1|A|A|1250
6MPI|1|A|A|1251
6MPI|1|A|A|1252
6MPI|1|A|G|1253
*
6MPI|1|A|C|1284
6MPI|1|A|A|1285
6MPI|1|A|A|1286
6MPI|1|A|A|1287
6MPI|1|A|A|1288
6MPI|1|A|A|1289
6MPI|1|A|G|1290
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
- Chain V
- 30S ribosomal protein Thx
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