IL_6MPI_051

3D structure

PDB id

6MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6MPI|1|A|C|1400, 6MPI|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MPI_051 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1958

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6MPI|1|A|C|1399
6MPI|1|A|C|1400
6MPI|1|A|G|1401
*
6MPI|1|A|C|1501
6MPI|1|A|A|1502
6MPI|1|A|A|1503
6MPI|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

mRNA A-site fragment