IL_6MTB_025

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCG*CCG

Length

7 nucleotides

Bulged bases

6MTB|1|5|G|481, 6MTB|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_025 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2522

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6MTB|1|5|C|480
6MTB|1|5|G|481
6MTB|1|5|C|481|||A
6MTB|1|5|G|482
*
6MTB|1|5|C|672
6MTB|1|5|C|673
6MTB|1|5|G|674

Current chains

Chain 5

28S rRNA

Nearby chains

Chain r

60S ribosomal protein L28