IL_6MTB_058

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCC*G(7MG)UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_058 not in the Motif Atlas

Geometric match to IL_9E6Q_030

Geometric discrepancy: 0.1965

The information below is about IL_9E6Q_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34942.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6MTB|1|5|G|1586
6MTB|1|5|G|1587
6MTB|1|5|U|1588
6MTB|1|5|C|1589
6MTB|1|5|C|1590
*
6MTB|1|5|G|1604
6MTB|1|5|7MG|1605
6MTB|1|5|U|1606
6MTB|1|5|C|1607

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain j

60S ribosomal protein L37