IL_6MTB_215

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_215 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2155

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6MTB|1|9|G|692
6MTB|1|9|A|693
6MTB|1|9|G|694
6MTB|1|9|C|695
*
6MTB|1|9|G|731
6MTB|1|9|U|732
6MTB|1|9|C|733
6MTB|1|9|C|734

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

40S ribosomal protein S7

Chain WW

40S ribosomal protein S15a