IL_6MTB_224

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6MTB|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_224 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.244

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6MTB|1|9|G|925
6MTB|1|9|A|926
6MTB|1|9|C|927
*
6MTB|1|9|G|1014
6MTB|1|9|U|1015
6MTB|1|9|U|1016
6MTB|1|9|U|1017

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

40S ribosomal protein S13

Chain bb

40S ribosomal protein S27