IL_6MTB_304

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTB_304 not in the Motif Atlas

Geometric match to IL_4V88_472

Geometric discrepancy: 0.1968

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6MTB|1|9|U|943
6MTB|1|9|A|944
6MTB|1|9|U|945
*
6MTB|1|9|A|981
6MTB|1|9|G|982
6MTB|1|9|A|983

Current chains

Chain 9

18S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain BB

40S ribosomal protein S3a

Chain OO

40S ribosomal protein S14