IL_6MTC_001

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6MTC|1|8|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_001 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.4991

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6MTC|1|5|C|6
6MTC|1|5|C|7
*
6MTC|1|8|G|149
6MTC|1|8|C|150
6MTC|1|8|G|151

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

60S Ribosomal protein L15

Chain X

60S ribosomal protein L23a