IL_6MTC_026

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6MTC|1|5|G|666, 6MTC|1|5|A|667, 6MTC|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_026 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1993

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6MTC|1|5|G|487
6MTC|1|5|G|488
*
6MTC|1|5|C|665
6MTC|1|5|G|666
6MTC|1|5|A|667
6MTC|1|5|C|668
6MTC|1|5|C|669

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

60S ribosomal protein L18

Chain r

60S ribosomal protein L28