IL_6MTC_029

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6MTC|1|5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_029 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2963

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6MTC|1|5|G|508
6MTC|1|5|A|509
6MTC|1|5|U|510
*
6MTC|1|5|A|649
6MTC|1|5|C|650

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain a

60S ribosomal protein L27a