IL_6MTC_038

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_038 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3661

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6MTC|1|5|G|740
6MTC|1|5|C|741
6MTC|1|5|G|742
6MTC|1|5|G|743
*
6MTC|1|5|C|921
6MTC|1|5|C|922

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a