IL_6MTC_044

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_044 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.3116

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6MTC|1|5|C|1097
6MTC|1|5|G|1098
*
6MTC|1|5|C|1197
6MTC|1|5|G|1198
6MTC|1|5|G|1199

Current chains

Chain 5

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L18a

Chain T

60S ribosomal protein L21