IL_6MTC_056
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAG*UG(B9B)AG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B9B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTC_056 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.1106
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
6MTC|1|5|C|1551
6MTC|1|5|G|1552
6MTC|1|5|A|1553
6MTC|1|5|A|1554
6MTC|1|5|G|1555
*
6MTC|1|5|U|1572
6MTC|1|5|G|1573
6MTC|1|5|B9B|1574
6MTC|1|5|A|1575
6MTC|1|5|G|1576
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain p
- 60S ribosomal protein L37a
Coloring options: