IL_6MTC_070

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_070 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3632

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6MTC|1|5|G|1760
6MTC|1|5|G|1761
6MTC|1|5|C|1762
6MTC|1|5|C|1763
*
6MTC|1|5|G|1769
6MTC|1|5|A|1770
6MTC|1|5|U|1771
6MTC|1|5|C|1772

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L11