IL_6MTC_089

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

6MTC|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_089 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2033

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6MTC|1|5|U|2415
6MTC|1|5|G|2416
6MTC|1|5|A|2417
6MTC|1|5|A|2418
6MTC|1|5|C|2419
*
6MTC|1|5|G|2427
6MTC|1|5|A|2428
6MTC|1|5|A|2429

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain l

60S ribosomal protein L39