IL_6MTC_093

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUGG*C(OMG)C

Length

9 nucleotides

Bulged bases

6MTC|1|5|G|2546

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_093 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2514

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6MTC|1|5|G|2542
6MTC|1|5|A|2543
6MTC|1|5|G|2544
6MTC|1|5|U|2545
6MTC|1|5|G|2546
6MTC|1|5|G|2547
*
6MTC|1|5|C|2772
6MTC|1|5|OMG|2773
6MTC|1|5|C|2774

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38