IL_6MTC_106

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6MTC|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_106 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.095

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6MTC|1|5|C|2867
6MTC|1|5|G|2868
6MTC|1|5|U|2869
6MTC|1|5|A|2870
6MTC|1|5|A|2871
6MTC|1|5|C|2872
*
6MTC|1|5|G|2877
6MTC|1|5|G|2878
6MTC|1|5|A|2879
6MTC|1|5|U|2880
6MTC|1|5|A|2881
6MTC|1|5|A|2882
6MTC|1|5|G|2883

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60S ribosomal protein L41

Chain p

60S ribosomal protein L37a