IL_6MTC_156
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUCGGAUAGC*GU(OMG)C(2MG)GAGAG
- Length
- 21 nucleotides
- Bulged bases
- 6MTC|1|5|C|4757, 6MTC|1|5|U|4758, 6MTC|1|5|A|4764, 6MTC|1|5|C|4871, 6MTC|1|5|G|4873, 6MTC|1|5|A|4874, 6MTC|1|5|A|4876
- QA status
- Modified nucleotides: OMG, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTC_156 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5544
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6MTC|1|5|C|4756
6MTC|1|5|C|4757
6MTC|1|5|U|4758
6MTC|1|5|C|4759
6MTC|1|5|G|4760
6MTC|1|5|G|4761
6MTC|1|5|A|4762
6MTC|1|5|U|4763
6MTC|1|5|A|4764
6MTC|1|5|G|4765
6MTC|1|5|C|4766
*
6MTC|1|5|G|4868
6MTC|1|5|U|4869
6MTC|1|5|OMG|4870
6MTC|1|5|C|4871
6MTC|1|5|2MG|4872
6MTC|1|5|G|4873
6MTC|1|5|A|4874
6MTC|1|5|G|4875
6MTC|1|5|A|4876
6MTC|1|5|G|4877
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- 60S ribosomal protein L13a
- Chain S
- 60S ribosomal protein L18a
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