Motif IL_28855.1 Version IL_28855.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 5-7 | 7-10 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_352 | 8P9A | 0.0000 | 5 | AR | LSU rRNA | U | 3179 | C | 3181 | G | 3182 | A | 3183 | A | 3184 | U | 3185 | A | 3187 | G | 3188 | * | C | 3204 | G | 3205 | G | 3208 | A | 3210 | cWW | ncsS | cWW | cWW |
| 2 | IL_8OI5_123 | 8OI5 | 0.0854 | 5 | 1 | LSU rRNA | U | 3149 | C | 3151 | G | 3152 | A | 3153 | A | 3154 | U | 3155 | A | 3157 | G | 3158 | * | C | 3169 | G | 3170 | G | 3173 | A | 3175 | cWW | ncsS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACGAAUAAG*CGCUGAA | 1 |
| UACGAAUAAG*CGCUGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACGAAUAA*GCUGA | 1 |
| ACGAAUAA*GCUGG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Heat map statistics
- Min 0.09 | Avg 0.04 | Max 0.09
Coloring options: