IL_6MTC_161

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_161 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.1606

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6MTC|1|5|U|4972
6MTC|1|5|U|4973
6MTC|1|5|C|4974
6MTC|1|5|G|4975
*
6MTC|1|5|C|4983
6MTC|1|5|C|4984
6MTC|1|5|U|4985
6MTC|1|5|G|4986

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain d

60S ribosomal protein L31