3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UC(E3C)A*UUAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: E3C

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTC_207 not in the Motif Atlas
Geometric match to IL_7LO9_003
Geometric discrepancy: 0.2486
The information below is about IL_7LO9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36940.4
Basepair signature
cWW-tSH-tWW-cWW
Number of instances in this motif group
5

Unit IDs

6MTC|1|9|U|566
6MTC|1|9|C|567
6MTC|1|9|E3C|568
6MTC|1|9|A|569
*
6MTC|1|9|U|581
6MTC|1|9|U|582
6MTC|1|9|A|583
6MTC|1|9|A|584

Current chains

Chain 9
18S rRNA

Nearby chains

Chain JJ
40S ribosomal protein S9
Chain YY
40S ribosomal protein S24

Coloring options:


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