IL_6MTC_211

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_211 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1543

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6MTC|1|9|G|665
6MTC|1|9|U|666
6MTC|1|9|U|667
6MTC|1|9|A2M|668
6MTC|1|9|A|669
6MTC|1|9|A|670
6MTC|1|9|A|671
*
6MTC|1|9|U|1161
6MTC|1|9|C|1162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

40S ribosomal protein S23

Chain aa

40S ribosomal protein S26