IL_6MTC_223

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6MTC|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_223 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.2441

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6MTC|1|9|G|925
6MTC|1|9|A|926
6MTC|1|9|C|927
*
6MTC|1|9|G|1014
6MTC|1|9|U|1015
6MTC|1|9|U|1016
6MTC|1|9|U|1017

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

40S ribosomal protein S13

Chain bb

40S ribosomal protein S27

Chain c

60S ribosomal protein L30